fit_STb()

Third step of analysis pipeline: Fits model using cmdstanr. After fitting, consider using STb_save() to store the output.

Usage

fit_STb(data_list, model_obj, ...)

Arguments

data_list

list object exported from import_user_STb or import_NBDA_STb

model_obj

Can be either model object exported from generate_STb_model or a filename

...

Additional arguments passed to mod$sample (e.g., chains, iter_warmup, iter_sampling, adapt_delta)

Value

A CmdStanMCMC fit object

Examples

data_list <- import_user_STb(STbayes::event_data, STbayes::edge_list)
model_obj <- generate_STb_model(data_list)
fit <- fit_STb(data_list,
    model_obj,
    parallel_chains = 4,
    chains = 4,
    cores = 4,
    iter = 4000,
    refresh = 1000
)